Polyglot programming for single-cell analysis

Authors
Affiliations

Benjamin Rombaut

Saeys lab

VIB Center for Inflammation Research

Ghent University

Louise Deconinck

Saeys lab

VIB Center for Inflammation Research

Ghent University

Robrecht Cannoodt

Published

September 12, 2024

Preface

This book is a collection of notebooks and explanations for the workshop on Polyglot programming for single-cell analysis given at the scverse Conference 2024. For more information, please visit the workshop page.

In order to use the best performing methods for each step of the single-cell analysis process, bioinformaticians need to use multiple ecosystems and programming languages. This is unfortunately not that straightforward. This workshop gives an overview of the different levels of interoperability, and how it is possible to integrate them in a single workflow.

To get started, read the Introduction chapter.

To learn more about Quarto books visit https://quarto.org/docs/books.